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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcccttcaagtgccccgctttcgatgtcgcctgccattgacccatgcacccaatcaacctccgctgctcccccgccgctggcccacacacggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTCGTCTACACTGTGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP01815
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438277|gb|BM003497.1|BM003497
EST:     CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAG                         CCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
genomic: CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAGgtaaggtgcc ... ggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
EST: gi|161792412|gb|FC080392.1|FC080392
EST:     CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAG                         CCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
genomic: CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAGgtaaggtgcc ... ggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
EST: gi|161812811|gb|FC094285.1|FC094285
EST:     CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAG                         CCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
genomic: CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAGgtaaggtgcc ... ggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTC
EST: gi|10126983|gb|BE725687.1|BE725687
EST:     CCTCGGACGTGCTGGCAGTAATGGTAACGGTGGAGAAGGCGAAGCTCAAG                         CCGTAGAACTGGGAGGCCAACCTCACGGAGCCAGGCACCC
genomic: CCTCGGACGTGCTGGCAGCAATGGTAACGGTGGAGAAGGCGAAGCTCAAGgtaaggtgcc ... ggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcccttcaagtgccccgctttcgatgtcgcctgccattgacccatgcacccaatcaacctccgctgctcccccgccgctggcccacacacggccatacagCCGGAGAACTGGGAGGCCAACCTCACGGCGCCAGGCACCCGCTGGCGGCTCGTCTACACTGTGT

- - - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - caatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca