1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgcccacttgaatgtgttagtgactgaaccccaacttctagcgcatacgcctgcagtcatgtgacccctgtcctcttccgcttcccgcccctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTGTCGGCTGACCCGGAGACCTT
species | Chlamydomonas reinhardtii |
transcript | EDP01724 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7616319|gb|AW721759.1|AW721759
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|49470868|gb|BP098729.1|BP098729
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7427096|gb|AW661269.1|AW661269
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7615707|gb|AW721147.1|AW721147
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|49469711|gb|BP097572.1|BP097572
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7426881|gb|AW661054.1|AW661054
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: C-AGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7413233|gb|AW651987.1|AW651987
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTTAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7427390|gb|AW661556.1|AW661556
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7616236|gb|AW721676.1|AW721676
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGEST: gi|7426808|gb|AW660981.1|AW660981
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
atacgcctgcagtcatgtgacccctgtcctcttccgcttcccgcccctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTGTCGGCTGACCCGGAGACCTT
tgacccctgtcctctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcccacttgaatgtgttagtgactgaaccccaacttctagcgcatacgcctgcagtcatgtgacccctgtcctcttccgcttcccgcccctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTGTCGGCTGACCCGGAGACCTT
-tgcccac
- - - - - - -tgtgtta
- - - - - - - - - - - - - -aacccca
- - - - - - - - - - - - - - - - - - - - - - catacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagtcat