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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgccgcactccgccacgtcgccaccatccctgctcttgcccctgctaacccgaccccacgccgcctgccttccccgccctcccacgccgcgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCTGACCACCGAGTCGGCGATGAAGAAGATCGAGGACAACAACACCCTGGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01709
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP01709 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: GRMZM2G172153_T01 (Zea mays), 3'ss of exon 10
ctgccgcactccgccacgtcgccaccatccctgctcttgcccctgctaacccgacccc-acgccgcctgccttccccgccctcccacgccgcgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCTGACCACCGAGTCGGCGATGAAGAAGATCGAGGACAACAACACCCTGGTC-----------------------------------------------------------
                         | ||| ||   || | ||  |  |   |||||  | |  | ||     ||||     |||| |           |||||  |||      | |||||||| ||||||    | |||||||  ||||| ||||| || ||||||||||||||||| || || |||||||| ||||||                                                           
----------------------gtacgtccgtgacatttcaccaccccaa--gaccctgaagaaggctagggaccccaagtacccaagaatt-------agcactacctgaaggaacaagcttgatcagtaccaaattctcaagtatcccctcaccacagAATCGGCGATGAAGAAGATTGAAGATAACAACACTCTGGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGCCAAGATGTATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34993204|gb|CF567121.1|CF567121
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|9027899|gb|BE237939.1|BE237939
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAGAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34987542|gb|CF561459.1|CF561459
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34994814|gb|CF568731.1|CF568731
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34983333|gb|CF557250.1|CF557250
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6551450|gb|AV397234.1|AV397234
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|22072614|gb|BQ821952.1|BQ821952
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6547622|gb|AV393406.1|AV393406
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34987787|gb|CF561704.1|CF561704
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6548274|gb|AV394058.1|AV394058
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34982003|gb|CF555920.1|CF555920
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34983741|gb|CF557658.1|CF557658
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGACGATCAG                         CACGCCCTCGCTTCAAAAGCTTGAC
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGAC
EST: gi|6543358|gb|AV389142.1|AV389142
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34983740|gb|CF557657.1|CF557657
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6547672|gb|AV393456.1|AV393456
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGC-TGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|7427134|gb|AW661306.1|AW661306
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6549034|gb|AV394818.1|AV394818
EST:     CGGCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34988059|gb|CF561976.1|CF561976
EST:     CGCCCGAAGACCCGGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34993436|gb|CF567353.1|CF567353
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34983365|gb|CF557282.1|CF557282
EST:     CGCCCGAAGACCCTGCAGAGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34991513|gb|CF565430.1|CF565430
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34993277|gb|CF567194.1|CF567194
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34991796|gb|CF565713.1|CF565713
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34983443|gb|CF557360.1|CF557360
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34982264|gb|CF556181.1|CF556181
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACAAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|49462611|gb|BP090524.1|BP090524
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34991066|gb|CF564983.1|CF564983
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6548876|gb|AV394660.1|AV394660
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCC
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTC-GCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCC
EST: gi|10783710|gb|AV640382.1|AV640382
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34985469|gb|CF559386.1|CF559386
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34982046|gb|CF555963.1|CF555963
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGAGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6549466|gb|AV395250.1|AV395250
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34994536|gb|CF568453.1|CF568453
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6545394|gb|AV391178.1|AV391178
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|10787303|gb|AV643975.1|AV643975
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|34991855|gb|CF565772.1|CF565772
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|49467236|gb|BP095149.1|BP095149
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|6549998|gb|AV395782.1|AV395782
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
EST: gi|22064005|gb|BQ815547.1|BQ815547
EST:     CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAG                         CACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT
genomic: CGCCCGAAGACCCTGCAGCGCACCCGCGAGGGCAAGTACCCGAAGATCAGgtgaggcgct ... cgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacccgaccccacgccgcctgccttccccgccctcccacgccgcgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCTGACCACCGAGTCGGCGATGAAGAAGATCGAGGACAACAACACCCTGGTC
 tgctaac  putative branch site (score: 1)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgccgcactccgccacgtcgccaccatccctgctcttgcccctgctaacccgaccccacgccgcctgccttccccgccctcccacgccgcgcaccgcagCACGCCCTCGCTTCAAAAGCTTGACCAGTACGCGGTGCTCAAGTTCCCCCTGACCACCGAGTCGGCGATGAAGAAGATCGAGGACAACAACACCCTGGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -accccac