1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaccctgctggcacactcaaccacgcacatgcatgcatgcacgctcatctgcatccaatatgcatgcgcgcatgcgtgtgcacgtgcactgcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAACAGCACCAAGGAGCACACGTACGGCGTCATCTGCAAGCACGGCGACCTG
species | Chlamydomonas reinhardtii |
transcript | EDP00021 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAG GGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAAEST: gi|15702289|gb|BI726594.1|BI726594
genomic: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAGgtgcgtgaat ... gcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAA
EST: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAG GGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAAEST: gi|14226991|gb|BG845807.1|BG845807
genomic: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAGgtgcgtgaat ... gcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAA
EST: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAG GGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAAEST: gi|23366955|gb|BU654774.1|BU654774
genomic: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAGgtgcgtgaat ... gcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAA
EST: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAG GGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAA
genomic: GGCGGCGGAGGCTGTCATGGACGAAGTACTGGCCAGgtgcgtgaat ... gcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAA
catctgcatccaatatgcatgcgcgcatgcgtgtgcacgtgcactgcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAACAGCACCAAGGAGCACACGTACGGCGTCATCTGCAAGCACGGCGACCTG
aatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccctgctggcacactcaaccacgcacatgcatgcatgcacgctcatctgcatccaatatgcatgcgcgcatgcgtgtgcacgtgcactgcacgtgcagGGTTCACCCCATCGCCAACATCCGGCTCATCTACATCGCCGAGGTGGTGAACAGCACCAAGGAGCACACGTACGGCGTCATCTGCAAGCACGGCGACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - acactca
- - - - - - - - - - - acgcaca
- - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgtgca