Sequence
atgc intronic sequence ATGC exonic sequence...tcctcccgaaaatcgacgcgatttgccccgctgatataccagattgacaccattgcatcgcataatgttgaaccgagcacgaaacacttcctcgcctcagGTGGCGGCGGTGATGAAGGCCACGTCAGCGCTGGTGGCCACGCGTGCCGTACCCTGGGCCGTCGTGCACGTGTGGGGATTCGCCGACACCCCCGTGGCGT
Basic information
| species | Chlamydomonas reinhardtii |
| transcript | EDP00005 |
| intron # | 2 |
| splice site | 3' |
| intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacaccattgcatcgcataatgttgaaccgagcacgaaacacttcctcgcctcagGTGGCGGCGGTGATGAAGGCCACGTCAGCGCTGGTGGCCACGCGTGCCGTACCCTGGGCCGTCGTGCACGTGTGGGGATTCGCCGACACCCCCGTGGCGT
gattgac putative branch site (score: 3)
cacttcctcgcctc putative PPT
ataatgtt TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctcccgaaaatcgacgcgatttgccccgctgatataccagattgacaccattgcatcgcataatgttgaaccgagcacgaaacacttcctcgcctcagGTGGCGGCGGTGATGAAGGCCACGTCAGCGCTGGTGGCCACGCGTGCCGTACCCTGGGCCGTCGTGCACGTGTGGGGATTCGCCGACACCCCCGTGGCGT
- - - - - - - - - - - - - - - - -atatacc
- - - - - - - - - - - - - - - - - - - - - attgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacact
