1 5' 3' | 2 5' 3' | 3 5' 3' |
...acccaccaaacaccacctcacctccacgcgccccactcgctcacgctcctagcatgatttccgtcacggacttaacttgccactcactgcctgtctgcagCTGAAGCAGCGCTTCTCAGGAGGACAGCAGCCCGCGGCGCCCAAGGGCAGCGCCGCCGCCGCCGCCGCCGAGGAGGCCGCCGCCGCTGAGGCCCGGCCTG
species | Chlamydomonas reinhardtii |
transcript | EDO99691 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ctcctagcatgatttccgtcacggacttaacttgccactcactgcctgtctgcagCTGAAGCAGCGCTTCTCAGGAGGACAGCAGCCCGCGGCGCCCAAGGGCAGCGCCGCCGCCGCCGCCGCCGAGGAGGCCGCCGCCGCTGAGGCCCGGCCTG
cactcac putative branch site (score: 2)
cctgtct putative PPT
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaccaaacaccacctcacctccacgcgccccactcgctcacgctcctagcatgatttccgtcacggacttaacttgccactcactgcctgtctgcagCTGAAGCAGCGCTTCTCAGGAGGACAGCAGCCCGCGGCGCCCAAGGGCAGCGCCGCCGCCGCCGCCGCCGAGGAGGCCGCCGCCGCTGAGGCCCGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
acccacc
- - - -aaacacc
- - - - - - - acctcac
- - - - - - - - - - - - cacgcgc
- - - - - - - - - - - - - - - - - actcgct
- - - - - - - - - - - - - - - - - - - - -cacgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acggact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac