Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgagcaagggcatcgtggacgctccgggaaggggcgtggctggaggaccgctggcggacgggccggccggctccagatctacgttgatctgcccatgcgaccatgcactaggcgcttacaagcctcggcacttatgcctttctatgtggcacgacataaaaattgaacttaccttgaccctcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGGCGGTGCTGCAGGCGCTTGTGTCGCGGGCCATGTCCAAATGAGGGTCTAA

Basic information

species Chlamydomonas reinhardtii
transcript EDO99106
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702959|gb|BI727264.1|BI727264
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
EST: gi|15701569|gb|BI725874.1|BI725874
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
EST: gi|161811129|gb|FC095306.1|FC095306
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACCAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
EST: gi|7616287|gb|AW721727.1|AW721727
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
EST: gi|16435557|gb|BM000777.1|BM000777
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
EST: gi|15700193|gb|BI724498.1|BI724498
EST:     ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAG                         GTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG
genomic: ACACTATCAGGTCAACAAGGTGCCCGCCTTCGTGCTCTTAGACAAGCAAGgtattgagca ... tcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctttctatgtggcacgacataaaaattgaacttaccttgaccctcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGGCGGTGCTGCAGGCGCTTGTGTCGCGGGCCATGTCCAAATGAGGGTCTAA
                                          ccctcctgt  CT-rich tract
                    ataaaaattgaactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgagcaagggcatcgtggacgctccgggaaggggcgtggctggaggaccgctggcggacgggccggccggctccagatctacgttgatctgcccatgcgaccatgcactaggcgcttacaagcctcggcacttatgcctttctatgtggcacgacataaaaattgaacttaccttgaccctcctgtgcagGTCGCGCCGTGGCATCAACGACAGGGCCCAAGCCGTACGAGCAAATGCAGGCGGTGCTGCAGGCGCTTGTGTCGCGGGCCATGTCCAAATGAGGGTCTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG