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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgctcgcttttcgtttggctcgtgcatgcttgcacgcgttatatgcatgtatgaagccatgttgagcatacttgcttctttggactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTGCGCTACCCCATTGAGCACGGTATTGTGACCAACTGGGACGACATGGAGA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22053164|gb|BQ810620.1|BQ810620
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10789628|gb|AV626993.1|AV626993
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10777850|gb|AV634530.1|AV634530
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22053091|gb|BQ810588.1|BQ810588
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22069702|gb|BQ819234.1|BQ819234
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10127691|gb|BE726395.1|BE726395
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|15370241|gb|BI529667.1|BI529667
EST:     TGGGCCAGGCCACCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGACCAAGCGCGGTATTCTGACTCTG
genomic: TGGGCC-GG-C-CCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|161797057|gb|FC085662.1|FC085662
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22071637|gb|BQ820975.1|BQ820975
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22070013|gb|BQ819473.1|BQ819473
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|9458838|gb|BE452551.1|BE452551
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|49461896|gb|BP089809.1|BP089809
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|14240923|gb|BG859739.1|BG859739
EST:     CGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCT
genomic: CGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGG-CCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCT
EST: gi|8576564|gb|BE129201.1|BE129201
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCAGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGAG-GCAGTCCAAGCGCGGTATTCTGACTCT
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAG-GCGCAGTCCAAGCGCGGTATTCTGACTCT
EST: gi|49464429|gb|BP092342.1|BP092342
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|49469137|gb|BP096998.1|BP096998
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10191366|gb|BE761442.1|BE761442
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|23362091|gb|BU649911.1|BU649911
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgctcgcttttcgtttggctcgtgcatgcttgcacgcgttatatgcatgtatgaagccatgttgagcatacttgcttctttggactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTGCGCTACCCCATTGAGCACGGTATTGTGACCAACTGGGACGACATGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA