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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagggtatcgttgcgtcaagcaaggccatcaggcgtctctggagtgttttcgagtgcaacacatttcacgttcatctaactgtgtgcccttgggcttgcctctcagGTACTACGCTCCGTGGTGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98781
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16071841|gb|BI873837.1|BI873837
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|161809958|gb|FC097639.1|FC097639
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|22075495|gb|BQ824271.1|BQ824271
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|16071822|gb|BI873818.1|BI873818
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|15702254|gb|BI726559.1|BI726559
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|161796779|gb|FC084539.1|FC084539
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG
EST: gi|22066783|gb|BQ817139.1|BQ817139
EST:     ACTGGCGACGGCAAGGTGTACTTCGTCAA                         GTACTACGCTCCGTGGTGCG
genomic: ACTGGCGACGGCAAGGTGTACTTCGTCAAgtgagtaggg ... tgcctctcagGTACTACGCTCCGTGGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgcaacacatttcacgttcatctaactgtgtgcccttgggcttgcctctcagGTACTACGCTCCGTGGTGCG
                      atctaac  putative branch site (score: 2)
                                           cttgcctctc  putative PPT