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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtccgaaaggaagcaggggcagcagcgcagggccgtgagagtgccagccgggggctccgtctcacggcactatgtttgctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98665
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34993690|gb|CF567607.1|CF567607
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|16436386|gb|BM001606.1|BM001606
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10772407|gb|AV623230.1|AV623230
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10783596|gb|AV640268.1|AV640268
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10776733|gb|AV633413.1|AV633413
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10777068|gb|AV633748.1|AV633748
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|6545895|gb|AV391679.1|AV391679
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10769591|gb|AV620416.1|AV620416
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10772163|gb|AV622986.1|AV622986
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGGTTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10778678|gb|AV635358.1|AV635358
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|34984847|gb|CF558764.1|CF558764
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|6547417|gb|AV393201.1|AV393201
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|6545428|gb|AV391212.1|AV391212
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10125857|gb|BE724561.1|BE724561
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10772132|gb|AV622955.1|AV622955
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|34987286|gb|CF561203.1|CF561203
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|16431118|gb|BI996344.1|BI996344
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|7686988|gb|AW757636.1|AW757636
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|49462107|gb|BP090020.1|BP090020
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10782372|gb|AV639052.1|AV639052
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|34987287|gb|CF561204.1|CF561204
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|15370641|gb|BI530067.1|BI530067
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|23365482|gb|BU653302.1|BU653302
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|22055775|gb|BQ812025.1|BQ812025
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|14229377|gb|BG848193.1|BG848193
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10780185|gb|AV636865.1|AV636865
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|34993249|gb|CF567166.1|CF567166
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|49462179|gb|BP090092.1|BP090092
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|15695686|gb|BI719991.1|BI719991
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10773890|gb|AV624713.1|AV624713
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|34984848|gb|CF558765.1|CF558765
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10780580|gb|AV637260.1|AV637260
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|10769647|gb|AV620472.1|AV620472
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
EST: gi|49464431|gb|BP092344.1|BP092344
EST:     GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGG                         TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC
genomic: GGTTAACATTTTCAAGGATGACAGCGTCATTCACTTCGTGAACCCCAAGGgtgggtccga ... ctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgagagtgccagccgggggctccgtctcacggcactatgtttgctcctcgcagTGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA
                         gtctcac  putative branch site (score: 3)
                                         tttgctcctc  putative PPT
                                     tatgttt  TA-rich tract