1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgggtcgtagggactgccgagcacatgttattgcatgcacaagctgtgcacacacatcacaatggtttcatttcttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG
species | Chlamydomonas reinhardtii |
transcript | EDO98563 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCGAGGGCGCCTACCAGAAGAAGATTGCCGAG GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCEST: gi|49470999|gb|BP098860.1|BP098860
genomic: CGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGgtgggtcgta ... ttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
EST: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAG GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCEST: gi|161820768|gb|FC106203.1|FC106203
genomic: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGgtgggtcgta ... ttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
EST: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAG GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCEST: gi|7616044|gb|AW721484.1|AW721484
genomic: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGgtgggtcgta ... ttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
EST: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAG GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCEST: gi|239841300|gb|GR283157.1|GR283157
genomic: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGgtgggtcgta ... ttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
EST: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAG GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
genomic: GTGCTTACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGgtgggtcgta ... ttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGC
attgcatgcacaagctgtgcacacacatcacaatggtttcatttcttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG
tttcatttcttgctt CT-rich tract
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtcgtagggactgccgagcacatgttattgcatgcacaagctgtgcacacacatcacaatggtttcatttcttgcttgcagGGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG