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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcgggacggggtttgggtgctgcaggcggccgcacatgcgtgttgctccgttgctgagtctcgccactgcgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCATCGTTTGAGTATCGGTACATGACGGAGTTCCAGTCGCACGAGCCGGAGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98296
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23366099|gb|BU653919.1|BU653919
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|23361873|gb|BU649709.1|BU649709
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|10788478|gb|AV626198.1|AV626198
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|10793718|gb|AV631084.1|AV631084
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|161802583|gb|FC092394.1|FC092394
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|8514502|gb|BE122397.1|BE122397
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|22057645|gb|BQ812683.1|BQ812683
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|23366667|gb|BU654486.1|BU654486
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|15369911|gb|BI529353.1|BI529353
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|16437384|gb|BM002604.1|BM002604
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|23363557|gb|BU651377.1|BU651377
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
EST: gi|15701364|gb|BI725669.1|BI725669
EST:     GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTG                         CGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA
genomic: GCGACCGGGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGgtgggtcggg ... cgcctcacagCGCGGGCCGGGCATGGACCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCA