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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcaagcagtgtcggcctcgcgcggaacggggtgttttgagagactccagcacggggtgagctggcgctccgcttgagtccgcccctccgctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98214
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8828611|gb|BE212341.1|BE212341
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161797192|gb|FC086850.1|FC086850
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|9210129|gb|BE337044.1|BE337044
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|8513658|gb|BE121553.1|BE121553
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|8287586|gb|BE025145.1|BE025145
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161815720|gb|FC103174.1|FC103174
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|10777244|gb|AV633924.1|AV633924
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161797645|gb|FC083702.1|FC083702
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|14229744|gb|BG848560.1|BG848560
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GNCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCC
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagG-CGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCC
EST: gi|49466444|gb|BP094357.1|BP094357
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|15371674|gb|BI531100.1|BI531100
EST:     CGCCGACGACATGCCCAAGACCGCGGATAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCAGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161797229|gb|FC086861.1|FC086861
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|22059925|gb|BQ813622.1|BQ813622
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|10191227|gb|BE761303.1|BE761303
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161800933|gb|FC084738.1|FC084738
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|14229745|gb|BG848561.1|BG848561
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161807616|gb|FC094621.1|FC094621
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|15371993|gb|BI531419.1|BI531419
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|22050891|gb|BQ809391.1|BQ809391
EST:     CGCCGACGACGTGCTCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|9459866|gb|BE452948.1|BE452948
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|10791808|gb|AV629174.1|AV629174
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|161791742|gb|FC078338.1|FC078338
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
EST: gi|16071604|gb|BI873600.1|BI873600
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGGCTCC
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGG-CTCC
EST: gi|23361835|gb|BU649655.1|BU649655
EST:     CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCG                         GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA
genomic: CGCCGACGACGTGCCCAAGACCGCGGAGAACTTCCGCGCCCTGTGCACCGgtgagcccga ... ctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagcacggggtgagctggcgctccgcttgagtccgcccctccgctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC
                                 tccgcccctccgct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaagcagtgtcggcctcgcgcggaacggggtgttttgagagactccagcacggggtgagctggcgctccgcttgagtccgcccctccgctacctacagGCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC

-tcaagca
- - - - - - - - - - - - - - - ggtgttt
- - - - - - - - - - - - - - - - - - - -agagact
- - - - - - - - - - - - - - - - - - - - - - - ccagcac