1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgggaaaaagagcaactgggtgcaagcgcgtggccctggccacaggcaagtcacaatttttactgcatcagttgctcaattgggcgcccgctgcgtgcagGCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTTCAGCCTGAGCGTGCGCAAGAAGGAGGCTCTGCAGGCTGAGCAGGCGGCT
species | Chlamydomonas reinhardtii |
transcript | EDO98131 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGCTTCGGCCAACATTATGCAGTTCGACGAGCTGTCTGATATCATTCG GCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTTEST: gi|49458736|gb|BP086649.1|BP086649
genomic: CATGCTTCGGCCAACATGATGCAGTTCGACGAGCTGTCTGATATCATTCGgtgagcttaa ... ctgcgtgcagGCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTT
EST: CATGCTTCGGCCAACATGATGCAGTTCGACGAGCTGTCTGATATCATTCG GCTGGTGCACGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTT
genomic: CATGCTTCGGCCAACATGATGCAGTTCGACGAGCTGTCTGATATCATTCGgtgagcttaa ... ctgcgtgcagGCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTT
gcaagtcacaatttttactgcatcagttgctcaattgggcgcccgctgcgtgcagGCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTTCAGCCTGAGCGTGCGCAAGAAGGAGGCTCTGCAGGCTGAGCAGGCGGCT
acaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgggaaaaagagcaactgggtgcaagcgcgtggccctggccacaggcaagtcacaatttttactgcatcagttgctcaattgggcgcccgctgcgtgcagGCTGGTGCATGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTTCAGCCTGAGCGTGCGCAAGAAGGAGGCTCTGCAGGCTGAGCAGGCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - aaaaaga
- - - - - - - - - - - - - - - - - - - - -acaggca
- - - - - - - - - - - - - - - - - - - - - - - - agtcaca