1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcgttgatattttaaacatgtttgagcgtgacaatgagcggcacttcgagtaaacatagcaactgacttcaatgtatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT
species | Chlamydomonas reinhardtii |
transcript | EDO98063 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAG GCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCEST: gi|14236905|gb|BG855721.1|BG855721
genomic: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAGgtgcgttgat ... tatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGC
EST: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAG GCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCEST: gi|161811521|gb|FC098025.1|FC098025
genomic: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAGgtgcgttgat ... tatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGC
EST: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAG GCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCEST: gi|8287575|gb|BE025134.1|BE025134
genomic: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAGgtgcgttgat ... tatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGC
EST: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAG GCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGC
genomic: ATAGCGACGTGCAGGGCGTGGAGTTCTGGATTGCCAACACCGACGCTCAGgtgcgttgat ... tatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGC
gacaatgagcggcacttcgagtaaacatagcaactgacttcaatgtatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT
aactgac putative branch site (score: 2)
aatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttgatattttaaacatgtttgagcgtgacaatgagcggcacttcgagtaaacatagcaactgacttcaatgtatttgacagGCCTTGGCAACGTCTCCCGTTAACGGCAAGTGCAAGGTGCAAATTGGAGGCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC