1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtttacatttcagaatctggcaaagggcgtagatggggcgacatgtcagggccacacgccgatcgacgcgagaactggggtacttttgtgccagctgcgcttgtgtgctgctttggcgtaaaaccatcgatgccattatgccttcttgcctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAG
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|14237765|gb|BG856581.1|BG856581
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|14240632|gb|BG859448.1|BG859448
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|22074089|gb|BQ823292.1|BQ823292
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|22059343|gb|BQ813385.1|BQ813385
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|15372908|gb|BI532334.1|BI532334
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|7593489|gb|AW707740.1|AW707740
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|22065979|gb|BQ816678.1|BQ816678
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|22065986|gb|BQ816683.1|BQ816683
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|14238251|gb|BG857067.1|BG857067
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|49464537|gb|BP092450.1|BP092450
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|8513586|gb|BE121481.1|BE121481
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|10782148|gb|AV638828.1|AV638828
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGEST: gi|49464844|gb|BP092757.1|BP092757
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCG
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|161817687|gb|FC099976.1|FC099976
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|10782000|gb|AV638680.1|AV638680
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|10127782|gb|BE726486.1|BE726486
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACEST: gi|7615363|gb|AW720809.1|AW720809
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
tgtgctgctttggcgtaaaaccatcgatgccattatgccttcttgcctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAG
ccttcttgcctgcctc CT-rich tract
taaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttacatttcagaatctggcaaagggcgtagatggggcgacatgtcagggccacacgccgatcgacgcgagaactggggtacttttgtgccagctgcgcttgtgtgctgctttggcgtaaaaccatcgatgccattatgccttcttgcctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAACGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG