1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catgtgcatgcagcagcccaaccagcacgcgcctagacccccacaccgcaaccttctcaccctgcgcgcctgcgcctgtcccttttgtcaccacatgtagATTCTGTTCGTGATCCAGTCGCCCGATGTCTTCAAGAGCCCCGCCTCGGACACCTACATCATCTTCGGCGAG
species | Chlamydomonas reinhardtii |
transcript | EDO97954 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCCCGTCACTGGCGTGACTCGCGTGACCATCAAGAAGAGCAAGAAC ATTCTGTTCGTGATCCAGTCGCCCGATGTCTTCAAGAGCCCCGCCTCGGAC
genomic: TGAAGCCCGTCACTGGCGTGACTCGCGTGACCATCAAGAAGAGCAAGAACgtaaggattg ... ccacatgtagATTCTGTTCGTGATCCAGTCGCCCGATGTCTTCAAGAGCCCCGCCTCGGAC
ccgcaaccttctcaccctgcgcgcctgcgcctgtcccttttgtcaccacatgtagATTCTGTTCGTGATCCAGTCGCCCGATGTCTTCAAGAGCCCCGCCTCGGACACCTACATCATCTTCGGCGAG
ttctcac putative branch site (score: 2)
tcccttttgtcacc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtgcatgcagcagcccaaccagcacgcgcctagacccccacaccgcaaccttctcaccctgcgcgcctgcgcctgtcccttttgtcaccacatgtagATTCTGTTCGTGATCCAGTCGCCCGATGTCTTCAAGAGCCCCGCCTCGGACACCTACATCATCTTCGGCGAG
- - -gcatgca
- - - - - - - - -ccaacca
- - - - - - - - - - - - -cacgcgc
- - - - - - - - - - - - - - - - - - - -cccacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaccct