1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagctattgcgcgcctggaaaccgcatagtctggatggcaacatgcagagcgacatcacctgctcatcgaaaccgtgttctttcacctgctgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTC
species | Chlamydomonas reinhardtii |
transcript | EDO97746 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTEST: gi|14228332|gb|BG847148.1|BG847148
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTEST: gi|22066441|gb|BQ816941.1|BQ816941
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTEST: gi|10778504|gb|AV635184.1|AV635184
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTEST: gi|10793202|gb|AV630568.1|AV630568
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTEST: gi|15371153|gb|BI530579.1|BI530579
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
EST: CCAGATGGCCAAGGCCTGGGCCGAG CGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
genomic: CCAGATGGCCAAGGCCTGGGCCGAGgtaggcacca ... tgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGT
cagagcgacatcacctgctcatcgaaaccgtgttctttcacctgctgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTC
ttctttcacctgct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagctattgcgcgcctggaaaccgcatagtctggatggcaacatgcagagcgacatcacctgctcatcgaaaccgtgttctttcacctgctgtcacgcagCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTC
- - - - - - - - - -aaccgca
- - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - agcgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctgc