Sequence
atgc intronic sequence ATGC exonic sequencegtaagcgtgagtcggggattcgtcgtcgcactagtccacgcttcgccacgccgggttcaccgttcacgggcctctgctgcgcagCATCGACTTCAAAATCAAGAAGGTGGACGTCGAGGGAAAACTCGTAAAGCTGCAAATCTGGGACACGGCGGGGCAAGAGCGCTTCCGCACCATCACCAGC
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO96660 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDO96660 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: EFJ36872 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcgtgagtcggggattcgtcgtcgcactagtccacgcttcgccacgccgggttcaccgttcacgggcctctgctgcgcagCATCGACTTCAAAATCAAGAAGGTGGACGTCGAGGGAAAACTCGTAAAGCTGCAAATCTGGGACACGGCGGGGCAAGAGCGCTTCCGCACCATCACCAGC
|| | | | | || | | | || | || |||||||| ||||| ||||||| || ||||| | || || || | ||||| ||||| |||||||| || ||||||||||||||||| || || || |
---------------------------------gtatatggcacattgtaaatgcgcagcc--tggctgaccatttcttcgcagCATTGACTTTAAAATCAGGACTGTGGATCTTGATGGCAAGAGGATCAAGCTCCAAATATGGGACACCGCTGGGCAAGAGCGCTTCCGGACTATAACAACT
upper sequence: EDO96660 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: EFJ27788 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcgtgagtcggggattcgtcgtcgcactagtccacgcttcgccacgccgggttcaccgttcacgggcctctgctgcgcagCATCGACTTCAAAATCAAGAAGGTGGACGTCGAGGGAAAACTCGTAAAGCTGCAAATCTGGGACACGGCGGGGCAAGAGCGCTTCCGCACCATCACCAGC
|| | | | | || | | | || | || |||||||| ||||| ||||||| || ||||| | || || || | ||||| ||||| |||||||| || ||||||||||||||||| || || || |
---------------------------------gtatatgtcacattgtaaatgcgcagcc--tggctgaccatttcttcgcagCATTGACTTTAAAATCAGGACTGTGGATCTTGATGGCAAGAGGATCAAGCTCCAAATATGGGACACCGCTGGGCAAGAGCGCTTCCGGACTATAACAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actagtccacgcttcgccacgccgggttcaccgttcacgggcctctgctgcgcagCATCGACTTCAAAATCAAGAAGGTGGACGTCGAGGGAAAACTCGTAAAGCTGCAAATCTGGGACACGGCGGGGCAAGAGCGCTTCCGCACCATCACCAGC
cctctgct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcgtgagtcggggattcgtcgtcgcactagtccacgcttcgccacgccgggttcaccgttcacgggcctctgctgcgcagCATCGACTTCAAAATCAAGAAGGTGGACGTCGAGGGAAAACTCGTAAAGCTGCAAATCTGGGACACGGCGGGGCAAGAGCGCTTCCGCACCATCACCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA