1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cacagcacacccagccctcacgctccctcccacacacgccctctcccttcgtggttaacaagtactcatgcatgtaacccccataaccaaatccccacagCTCATGGGCAAGAACAAGGTGCTTGTCAAGGTGCACCCCGAGGGCAAGTACGTGGTGGACATTGACAAG
species | Chlamydomonas reinhardtii |
transcript | EDO96639 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAGCTTCTACAAGAGCCGGGCTCCTACGTGGGCGAGGTTATCAAG CTCATGGGCAAG
genomic: AGCTGCAGCTTCTACAAGAGCCGGGCTCCTACGTGGGCGAGGTTATCAAGgtaggggggc ... atccccacagCTCATGGGCAAG
ccttcgtggttaacaagtactcatgcatgtaacccccataaccaaatccccacagCTCATGGGCAAGAACAAGGTGCTTGTCAAGGTGCACCCCGAGGGCAAGTACGTGGTGGACATTGACAAG
ccataac putative branch site (score: 3)
tccccac putative PPT
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagcacacccagccctcacgctccctcccacacacgccctctcccttcgtggttaacaagtactcatgcatgtaacccccataaccaaatccccacagCTCATGGGCAAGAACAAGGTGCTTGTCAAGGTGCACCCCGAGGGCAAGTACGTGGTGGACATTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - acaccca
- - - - - - - ccctcac
- - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataacca