1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggggctctgggcattgcggctgagttgcagtggcaggtgtgtggtgcaggccgggaccggggcgggacatggaactgaaatccgtgccgccagtcatgactcgcatgcacctcctgcttgcgcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCAACATCGGGCTGTACTGCAACCAGGCCTGCAGCCACTGCCACGTGGAGT
species | Chlamydomonas reinhardtii |
transcript | EDO96585 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCEST: gi|15696824|gb|BI721129.1|BI721129
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCEST: gi|10784305|gb|AV640977.1|AV640977
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCEST: gi|15696826|gb|BI721131.1|BI721131
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCEST: gi|161790197|gb|FC076976.1|FC076976
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggggctctgggcattgcggctgagttgcagtggcaggtgtgtggtgcaggccgggaccggggcgggacatggaactgaaatccgtgccgccagtcatgactcgcatgcacctcctgcttgcgcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCAACATCGGGCTGTACTGCAACCAGGCCTGCAGCCACTGCCACGTGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG