Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcccagaattgggtttcgaggctggggtaccggctggcccttttgggagctggcctgcgcttgtgagcctgccgtccgttgtgcgcactacctttctcctaccctaccatacctggccttacaacccacgcactgattcggcgtaattcattcgccatcgtgctgttactgcttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96521
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34985415|gb|CF559332.1|CF559332
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989570|gb|CF563487.1|CF563487
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34990626|gb|CF564543.1|CF564543
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTA                         AAAACTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|8932864|gb|BE227625.1|BE227625
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34993723|gb|CF567640.1|CF567640
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34990415|gb|CF564332.1|CF564332
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCAATATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989267|gb|CF563184.1|CF563184
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AAAAATATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|15701769|gb|BI726074.1|BI726074
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34993288|gb|CF567205.1|CF567205
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989651|gb|CF563568.1|CF563568
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|15703706|gb|BI728011.1|BI728011
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|16432459|gb|BI997685.1|BI997685
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34991369|gb|CF565286.1|CF565286
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34993942|gb|CF567859.1|CF567859
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34982454|gb|CF556371.1|CF556371
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|22056996|gb|BQ812469.1|BQ812469
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34990412|gb|CF564329.1|CF564329
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AAAGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|16071488|gb|BI873484.1|BI873484
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|16072230|gb|BI874226.1|BI874226
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34983474|gb|CF557391.1|CF557391
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|16436197|gb|BM001417.1|BM001417
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|15371758|gb|BI531184.1|BI531184
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989650|gb|CF563567.1|CF563567
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989571|gb|CF563488.1|CF563488
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTA                         AAAAATATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34983476|gb|CF557393.1|CF557393
EST:     TGAGAGTGAATGCCAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34983404|gb|CF557321.1|CF557321
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34982455|gb|CF556372.1|CF556372
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AAAAATATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|16437782|gb|BM003002.1|BM003002
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34990627|gb|CF564544.1|CF564544
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34993509|gb|CF567426.1|CF567426
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34992412|gb|CF566329.1|CF566329
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34983403|gb|CF557320.1|CF557320
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|15696361|gb|BI720666.1|BI720666
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34989572|gb|CF563489.1|CF563489
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34985416|gb|CF559333.1|CF559333
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34981552|gb|CF555469.1|CF555469
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
EST: gi|34990625|gb|CF564542.1|CF564542
EST:     TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTG                         AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC
genomic: TGAGAGTGAATGGGAGGGCGGCATCTTCACCCTCAGGTTCACGTTTACTGgtgtgtccca ... ttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcactgattcggcgtaattcattcgccatcgtgctgttactgcttccgcgcagAGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA
   cactgat  putative branch site (score: 3)
                                         ctgcttcc  putative PPT
                taattcatt  TA-rich tract