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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttatgaattacgaatcaggcttcacacgcggactgtttccatcaattaccattgtgtcactgacaccgttgactttgcctggcctcgccctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACACGCCGCTGCTGCCGGCTGTGGCGACCGGAACCATGGAGGAGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96450
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234225|gb|BG853041.1|BG853041
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|10785794|gb|AV642466.1|AV642466
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|239842069|gb|GR283926.1|GR283926
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCC
EST: gi|15369093|gb|BI528519.1|BI528519
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATG
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATG
EST: gi|10788743|gb|AV626463.1|AV626463
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|15700427|gb|BI724732.1|BI724732
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|10788305|gb|AV626025.1|AV626025
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|10792082|gb|AV629448.1|AV629448
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|23359933|gb|BU647753.1|BU647753
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|14234224|gb|BG853040.1|BG853040
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|14234866|gb|BG853682.1|BG853682
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACAC
EST: gi|239842068|gb|GR283925.1|GR283925
EST:     TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAG                         CTCGACCCATGAGCTCATCGTCGTCTCGCC
genomic: TCCGGCTGGGGCGCCATGTCGTTCCTGAAGGCGCTGCCGACCAGCATCAGgtgcgttatg ... ctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccattgtgtcactgacaccgttgactttgcctggcctcgccctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACACGCCGCTGCTGCCGGCTGTGGCGACCGGAACCATGGAGGAGCG
                                      cctcgccctcctcgc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgttatgaattacgaatcaggcttcacacgcggactgtttccatcaattaccattgtgtcactgacaccgttgactttgcctggcctcgccctcctcgcagCTCGACCTATGAGCTCATCGTCGTCTCGCCTCGCAACTACTTCCTGTACACGCCGCTGCTGCCGGCTGTGGCGACCGGAACCATGGAGGAGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG