Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtgtgtggggggggggttgggggtggccacactcatgcacacacgtgcgtgtgcaggcaacggtgaacacacacacacacacacacacacacacactcgctctctctgcacagGTGTGGGTGTACGGCAACAGCTTTGAGAGCTGCCTGGTGGCGGTGGTGGTCCCGGCCAAGGACGTCATCACGGCCTGGGCCAAGGAGCAGGGCGTGACGG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO95646 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDO95646 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: AT4G23850.1 (Arabidopsis thaliana), 3'ss of exon 16
gtgtgtgtgtggggggggggttgggggtggccacactcatgcacaca-cgtgcgtgtgcaggcaacggtgaacacacacacacacacacacacacacacactcgctctctctgcacagGTGTGGGTGTACGGCAACAGCTTTGAGAGCTGCCTGGTGGCGGTGGTGGTCCCGGCCAAGGACGTCATCACGGCCTGGGCCAAGGAGCAGGGCGTGACGG
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--------gtaagtaaccgatttgtagttttctctctcataggtttggtaaatattctcatctactgataatcacaatcaca---atatttccattcaaatttatt----------agGTGTGGGTGTACGGTAACAGCTTTGAGTCCTTCCTAATAGCTATCGCCAACCCAAACCAGCATATCCTTGAACGCTGGGCTGCAGAAAACGGTGTGAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacggtgaacacacacacacacacacacacacacacactcgctctctctgcacagGTGTGGGTGTACGGCAACAGCTTTGAGAGCTGCCTGGTGGCGGTGGTGGTCCCGGCCAAGGACGTCATCACGGCCTGGGCCAAGGAGCAGGGCGTGACGG
cactcgctctctct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgtgtggggggggggttgggggtggccacactcatgcacacacgtgcgtgtgcaggcaacggtgaacacacacacacacacacacacacacacactcgctctctctgcacagGTGTGGGTGTACGGCAACAGCTTTGAGAGCTGCCTGGTGGCGGTGGTGGTCCCGGCCAAGGACGTCATCACGGCCTGGGCCAAGGAGCAGGGCGTGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG