1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
...gcaggcgtgcagacgatagccagccagccgcgtgtgtaatgatgtgaacgtgcttgttgcttgtgttgatcgtgtgtccgtgtcgtttgggccggcacagGTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCGCATGGCGGCTTGAGCACCGAGGCCCGCAAGCGCCTGACCATTGCGGTGG
species | Chlamydomonas reinhardtii |
transcript | EDP00392 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GGCTGCACGGCGCAGCGGCGCTGAAGGCCTACCTGGCAGCCATGATGGAG GTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCGEST: gi|42752414|gb|BP383725.1|BP383725
genomic: GGCTGCACGGCGCAGCGGCGCTGAAGGCCTACCTGGCAGCCATGATGGAGgtgcggcgca ... gccggcacagGTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCG
EST: GGCTGCACGGCGCAGCGGCGCTGAAGGCCTACCTGGCAGCCATGATGGAG GTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCG
genomic: GGCTGCACGGCGCAGCGGCGCTGAAGGCCTACCTGGCAGCCATGATGGAGgtgcggcgca ... gccggcacagGTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCG
gaacgtgcttgttgcttgtgttgatcgtgtgtccgtgtcgtttgggccggcacagGTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCGCATGGCGGCTTGAGCACCGAGGCCCGCAAGCGCCTGACCATTGCGGTGG
tgttgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggcgtgcagacgatagccagccagccgcgtgtgtaatgatgtgaacgtgcttgttgcttgtgttgatcgtgtgtccgtgtcgtttgggccggcacagGTGGTGGAGCTGACGCCGTTGGCCGGCAAGCGCATTGGCAGCGGCGGCGCGCATGGCGGCTTGAGCACCGAGGCCCGCAAGCGCCTGACCATTGCGGTGG
- - - - gcagacg
- - - - - - - -atagcca
- - - - - - - - - - - - - - - cgtgtgt
- - - - - - - - - - - - - - - - - - - - -atgtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgtttg