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...tattactgagtgccactaatgttcgacctgccaagccgcatttccgggatggtgcatttcgtattgtgatccccgctgtcctcgtttcgttcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACCAGCAACTTGGAGCTTGGAGAGCTAGCGGCTGAGCGTTGGGAGAGGTCCA
species | Chlamydomonas reinhardtii |
transcript | EDO97121 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACTEST: gi|9210766|gb|BE337681.1|BE337681
genomic: GTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
EST: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGEST: gi|10769357|gb|AV620182.1|AV620182
genomic: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATG
EST: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAAACEST: gi|14235278|gb|BG854094.1|BG854094
genomic: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
EST: GACCGGNCCCCACC-GGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACCEST: gi|15372599|gb|BI532025.1|BI532025
genomic: GACCGG--ACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
EST: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACTEST: gi|14235280|gb|BG854096.1|BG854096
genomic: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
EST: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG GCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
genomic: ACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAGgtgcgtgatg ... tcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACC
gggatggtgcatttcgtattgtgatccccgctgtcctcgtttcgttcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACCAGCAACTTGGAGCTTGGAGAGCTAGCGGCTGAGCGTTGGGAGAGGTCCA
tcctcgtttcgttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattactgagtgccactaatgttcgacctgccaagccgcatttccgggatggtgcatttcgtattgtgatccccgctgtcctcgtttcgttcggccgcagGCGTCTGCCGATGAGGAGTAAGCGGCGCGACCTTGTCCCTGTTGATAAACCAGCAACTTGGAGCTTGGAGAGCTAGCGGCTGAGCGTTGGGAGAGGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - actgagtg
- - - - - - -cactaat
- - - - - - - - - - - - - - - - -agccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcgtat