1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtggggcggggcaaggggtcgatgtgcatttccggggcaaaaagaagcgggaagtggttggagcaggtgacgcttaccgggctgcatgtatgtatgttggctggtctaagcactccctacctgccccacccaactgcctgcccgcgccctcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGGTGTGGTCCGGGACCTGGTGGACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97121 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAG GTCCGTGTGCCTGCCAGCGAGGTGGCGGNNTGTGGTCCGGNACCTGGTGGAEST: gi|10769357|gb|AV620182.1|AV620182
genomic: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAGgtggggcggg ... tcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGG-TGTGGTCCGGGACCTGGTGGA
EST: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAG GTCCGTGTGCCTGCCAGCGAGGTGGCGGGTGTGGTCCGGGACCTGGTGGACEST: gi|15372599|gb|BI532025.1|BI532025
genomic: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAGgtggggcggg ... tcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGGTGTGGTCCGGGACCTGGTGGAC
EST: GGAGGGCGACGGNCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAG GTNCCGTGTGCCTGCCAGCGAGGTGGCGGGTTGTTGGTCCCGGGACCCTGGEST: gi|14235280|gb|BG854096.1|BG854096
genomic: GGAGGGCGACGG-CTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAGgtggggcggg ... tcccgctcagGT-CCGTGTGCCTGCCAGCGAGGTGGCGGGT-GT-GGTCC-GGGACC-TGG
EST: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAG GTCCGTGTGCCTGCCAGCGAGG-GNCGNGTTGTGGTCCGGGACCTGGTGGA
genomic: TGGAGGGCGACGGCTCGGTCACGCTGCGCGAGCGCGACAGCATGACGCAGgtggggcggg ... tcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGGT-GTGGTCCGGGACCTGGTGGA
tctaagcactccctacctgccccacccaactgcctgcccgcgccctcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGGTGTGGTCCGGGACCTGGTGGACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG
ccctcccgctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggcggggcaaggggtcgatgtgcatttccggggcaaaaagaagcgggaagtggttggagcaggtgacgcttaccgggctgcatgtatgtatgttggctggtctaagcactccctacctgccccacccaactgcctgcccgcgccctcccgctcagGTCCGTGTGCCTGCCAGCGAGGTGGCGGGTGTGGTCCGGGACCTGGTGGACGACCGGACCACCTGGGAGGCCGTCAGCAGCAAGTACCCCGCGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG