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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaacgctgatgcattgcttgggtcaaccaggggaacatgcagcccgcaccgccctggcatttactggtatgcgtgtggtggacgctttcctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTTGGACCTTGCGCCAGGAATTGGGCCGCGTGCAGCGCTTTCGTGCGGAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228434|gb|BG847250.1|BG847250
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23365053|gb|BU652873.1|BU652873
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|16431747|gb|BI996973.1|BI996973
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|16433637|gb|BI998863.1|BI998863
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCCAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23358398|gb|BU646218.1|BU646218
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23367838|gb|BU655656.1|BU655656
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23365705|gb|BU653525.1|BU653525
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCTAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|16431543|gb|BI996769.1|BI996769
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|15695447|gb|BI719752.1|BI719752
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCCCCGCCAAGGAGCCCGTCACG                         GTCCAGGCGTAAGCGCGGCGTGTTCCCCAGTCCCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|22050063|gb|BQ809048.1|BQ809048
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23361180|gb|BU649000.1|BU649000
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCAAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|16072684|gb|BI874680.1|BI874680
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|23367696|gb|BU655514.1|BU655514
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: gi|16437589|gb|BM002809.1|BM002809
EST:     GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG                         GTCCAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcaccgccctggcatttactggtatgcgtgtggtggacgctttcctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTTGGACCTTGCGCCAGGAATTGGGCCGCGTGCAGCGCTTTCGTGCGGAAC
                                         ctttcctgtt  CT-rich tract
               atttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcaacgctgatgcattgcttgggtcaaccaggggaacatgcagcccgcaccgccctggcatttactggtatgcgtgtggtggacgctttcctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTTGGACCTTGCGCCAGGAATTGGGCCGCGTGCAGCGCTTTCGTGCGGAAC

- - - - - - - -ttgcttg
- - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt