Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgggttgccagtgagaaccgccagacgcgcgtactggtgcatgctagcagctcccgcatgtacagcacatgcgagcgtgtagtgcaaacatcttataaccgttgctgagctctgccgcgcacgtatcccccagGTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCGACCCATTGACCGTGCCGCCGACCTCATCTAGCGTGGCGGAGACGGTGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98047
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34981241|gb|CF555158.1|CF555158
EST:     ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAG                         GTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG
genomic: ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAGgtgaatgggt ... tatcccccagGTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG
EST: gi|161790640|gb|FC079408.1|FC079408
EST:     ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAG                         GTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG
genomic: ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAGgtgaatgggt ... tatcccccagGTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG
EST: gi|15701649|gb|BI725954.1|BI725954
EST:     ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAG                         GTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG
genomic: ATACGAGTTCAACCTGGACGAGTCCAAGGGGACAGTGGGCATGACAACAGgtgaatgggt ... tatcccccagGTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgcaaacatcttataaccgttgctgagctctgccgcgcacgtatcccccagGTGCCACCATCCACACCACCAACGGTCTAAACATGTTTGTTCGTCGGCGCGACCCATTGACCGTGCCGCCGACCTCATCTAGCGTGGCGGAGACGGTGTC
              ttataac  putative branch site (score: 2)
                                             tatccccc  putative PPT
           atcttataa  TA-rich tract