Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtgcttggctgcctcgctgtttcggcggagtcgtattgttgatgttgctgatgtctagctgatgttgctgttgctctcgtgtgttttgcgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCGGCATCATCGACCCCACCAAGGTGGTCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03982
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22052891|gb|BQ810458.1|BQ810458
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACC
EST: gi|10778875|gb|AV635555.1|AV635555
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: gi|16435375|gb|BM000595.1|BM000595
EST:     ACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: ACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: gi|8828679|gb|BE212409.1|BE212409
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: gi|9460610|gb|BE453322.1|BE453322
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: gi|22052894|gb|BQ810459.1|BQ810459
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: gi|22060239|gb|BQ813728.1|BQ813728
EST:     CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG                         TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgcttggctgcctcgctgtttcggcggagtcgtattgttgatgttgctgatgtctagctgatgttgctgttgctctcgtgtgttttgcgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCGGCATCATCGACCCCACCAAGGTGGTCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
-tgtgctt
- - - - - - - - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - atgtcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt