1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gctgctgtatccttgttccagacgcccccctctctggtatcctcttggcaatggtggaaacaagccccccccctctccctgccttcctccccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACCACGGTGGACGACGTGCTGGACATGTACCGCCGCATCACCGGCCGCGAC
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|23365053|gb|BU652873.1|BU652873
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCAAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|16431747|gb|BI996973.1|BI996973
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: GACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|16433637|gb|BI998863.1|BI998863
genomic: GACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTGGAGACEST: gi|23358398|gb|BU646218.1|BU646218
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|23367838|gb|BU655656.1|BU655656
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|15373415|gb|BI532841.1|BI532841
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACTGCACCAA GGACCATGCGTTCATCAEST: gi|23365705|gb|BU653525.1|BU653525
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCA
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTATGACGCCACCACGCACTTTGAGACEST: gi|16431543|gb|BI996769.1|BI996769
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: GTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|15695447|gb|BI719752.1|BI719752
genomic: GTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATTTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGGTACGACGCCCCCACGCACTTCGAGACEST: gi|22050063|gb|BQ809048.1|BQ809048
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|16072684|gb|BI874680.1|BI874680
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: TACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|23367696|gb|BU655514.1|BU655514
genomic: TACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|14230194|gb|BG849010.1|BG849010
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACEST: gi|16437589|gb|BM002809.1|BM002809
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTTGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
tggcaatggtggaaacaagccccccccctctccctgccttcctccccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACCACGGTGGACGACGTGCTGGACATGTACCGCCGCATCACCGGCCGCGAC
caagccccccccctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgctgtatccttgttccagacgcccccctctctggtatcctcttggcaatggtggaaacaagccccccccctctccctgccttcctccccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGACCACGGTGGACGACGTGCTGGACATGTACCGCCGCATCACCGGCCGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - cagacgc