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...ggctcagcacgcgacgcgtcgcgcccactgcatctctcgtgacgtcttttacatgcgggctgcgtcacccaacaacccaaccacacacgcacacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCGACATCATCAAGCGCGCGCTCAGCTACCCCATCAAGCTCATCGCCAACA
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|16435777|gb|BM000997.1|BM000997
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCEST: gi|10778875|gb|AV635555.1|AV635555
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|8828679|gb|BE212409.1|BE212409
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|22068172|gb|BQ818111.1|BQ818111
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|10770164|gb|AV620989.1|AV620989
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|49465911|gb|BP093824.1|BP093824
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTEST: gi|22052894|gb|BQ810459.1|BQ810459
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTT
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCEST: gi|22060239|gb|BQ813728.1|BQ813728
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctcagcacgcgacgcgtcgcgcccactgcatctctcgtgacgtcttttacatgcgggctgcgtcacccaacaacccaaccacacacgcacacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCCGACATCATCAAGCGCGCGCTCAGCTACCCCATCAAGCTCATCGCCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - gcacgcg
- - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - acatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacg