Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgtgaggatgcatgacggcgggatgttgcgggtgccgtgtacgtgcggattgatgtgcacctggcgcgtacgtttgtcttgagaaacagatcacaacgaccatggacgcacaacctcccggcctcctttcattccttcctccctcccttgctcgccccctcccacccgtggcgtagGAATGCCCCCAATGGCCCTGGCAACGATTTTGGCACCTGCGCGTTTGCCACGGCGCTGCGGCAATCACGTGCCTACCAGAACGCCTGCATCTACGCCAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP02967
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701415|gb|BI725720.1|BI725720
EST:     TCGAACATGTCGGAGCAGTACTTCAACGACACCGCTCTTGCCGTCGTTTG                         GAATGCCCCCAATGGCCCTGGCAACGATTTTGGCACCTGCGCGTTTGCCAC
genomic: TCGAACATGTCGGAGCAGTACTTCAACGACACCGCTCTTGCCGTCGTTTGgtgcgtgcgt ... cgtggcgtagGAATGCCCCCAATGGCCCTGGCAACGATTTTGGCACCTGCGCGTTTGCCAC
EST: gi|161791763|gb|FC078346.1|FC078346
EST:     TCGAACATGTCGGAGCAGTACTTCAACAACACCGCTCTTGACGTCGTTTG                         GAATGCCCCCAACGGCCCCGGCAACGATNTTGGCACCTGCGCGTTTGCCAC
genomic: TCGAACATGTCGGAGCAGTACTTCAACGACACCGCTCTTGCCGTCGTTTGgtgcgtgcgt ... cgtggcgtagGAATGCCCCCAATGGCCCTGGCAACGATTTTGGCACCTGCGCGTTTGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcctttcattccttcctccctcccttgctcgccccctcccacccgtggcgtagGAATGCCCCCAATGGCCCTGGCAACGATTTTGGCACCTGCGCGTTTGCCACGGCGCTGCGGCAATCACGTGCCTACCAGAACGCCTGCATCTACGCCAAC
       tcattccttcctccct  CT-rich tract
     tttcatt  TA-rich tract