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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaggcccagggtgtgcgggccaggcgggtccacaggtgccagaggcgctagcgcacgcctgcaggaatcgggacaggcacagtggctgtgtccggacatcgggcagcgtgtactgcagtggtaagctcgctgggcccggaacacgaacccgcactgcttacggcatctgcagGTTCTCTGTGGAGCGTGTGGCGCTGGCGGAGACGGAGTCCAGTGGCCGCGAGGTTGTGTACCAGAACGCGGCGGGCCCCCATGTCACCCTGGCGGTTGAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00589
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364527|gb|BU652347.1|BU652347
EST:     ACCTGGTTGACAG                         GTTCTCTGTGGAGCGTGTGGCGCTGGCGGAGACGGAGTCCAGTGGCCGCGA
genomic: ACCTGGTTGACAGgtgggaggcc ... gcatctgcagGTTCTCTGTGGAGCGTGTGGCGCTGGCGGAGACGGAGTCCAGTGGCCGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtaagctcgctgggcccggaacacgaacccgcactgcttacggcatctgcagGTTCTCTGTGGAGCGTGTGGCGCTGGCGGAGACGGAGTCCAGTGGCCGCGAGGTTGTGTACCAGAACGCGGCGGGCCCCCATGTCACCCTGGCGGTTGAC
                                     tgcttac  putative branch site (score: 2)