1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttctgatacctccctgaacgtttacggggctcagccgcccttgatgcagatgcatgaactgacacaaatccccatcctctccgctgcaccctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGCCTACCTGCCCTTTGGCGGTGGCCGCCGCAAGTGCATTGGCGACCAG
species | Chlamydomonas reinhardtii |
transcript | EDO98047 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCG CTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGCEST: gi|161790640|gb|FC079408.1|FC079408
genomic: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCGgtgagcaaga ... cctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGC
EST: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCG CTTCGGACCGCTGGACAGCCCCATCCCCAATGAGGTGACTGAAAACTTCGCEST: gi|15701649|gb|BI725954.1|BI725954
genomic: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCGgtgagcaaga ... cctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGC
EST: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCG CTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGC
genomic: CACCGCAGCCCTAAGCTGTGGGACGAGCCCGACAAGTTCAAGCCGGAGCGgtgagcaaga ... cctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGC
tgcagatgcatgaactgacacaaatccccatcctctccgctgcaccctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGCCTACCTGCCCTTTGGCGGTGGCCGCCGCAAGTGCATTGGCGACCAG
aactgac putative branch site (score: 2)
tccccatcctctccgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgatacctccctgaacgtttacggggctcagccgcccttgatgcagatgcatgaactgacacaaatccccatcctctccgctgcaccctcttacagCTTCGGACCGCTGGACAGCCCCATCCCCAACGAGGTGACTGAAAACTTCGCCTACCTGCCCTTTGGCGGTGGCCGCCGCAAGTGCATTGGCGACCAG
- - - - - - - - - - - - - - - - - - - - - - atgcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa