1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gactgcaaattaatacgctccggagcagtcatgaggagcagtggagtcttccaagcattgaactaagcgctacccggtgaacctgcaacgtgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCGCCAACAAGAACACTGTGCCCGGCGACGTGAGCGCGCTGGTGCCCGGCG
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTCGGGCGGACACCGACA-CCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGNCEST: gi|161796862|gb|FC083218.1|FC083218
genomic: GTCGGGCGG-CACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
EST: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCEST: gi|15368219|gb|BI527645.1|BI527645
genomic: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
EST: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCEST: gi|10773200|gb|AV624023.1|AV624023
genomic: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
EST: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCEST: gi|14229690|gb|BG848506.1|BG848506
genomic: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
EST: TGTCGGTCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTTAACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCEST: gi|161817251|gb|FC104090.1|FC104090
genomic: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
EST: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAG GGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
genomic: TGTCGGGCGGCACCGACAACCACATCGTGCTGGTGGACCTGCGGCCAAAGgcgagtaccg ... tgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactgcaaattaatacgctccggagcagtcatgaggagcagtggagtcttccaagcattgaactaagcgctacccggtgaacctgcaacgtgtcttgcagGGCGTCGACGGCAGCCGCGTGGAGCGTGTGCTGGAGCTGGCGCACATCGCCGCCAACAAGAACACTGTGCCCGGCGACGTGAGCGCGCTGGTGCCCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - atacgct
- - - - - - - - - - - - -cagtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgca