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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacacgggatgtgttggcggaggcggttgcgggagcccagctttccttgaaccatcttggacacagcctttgtactgctggatgtccttcacgcaatctgctgcccctttctgcgtgtgcagAGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09323
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693911|gb|BI718216.1|BI718216
EST:     GGTAACCCACATGGCACCAGAGCTGCTTCCAGGAA                         AGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG
genomic: GGTAACCCACATGGCACCAGAGCTGCTTCCAGGAAgtaagcaaca ... gcgtgtgcagAGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG
EST: gi|15703422|gb|BI727727.1|BI727727
EST:     GGTAACCCACATGGCACCAGAGCTGCTTCCAGGAA                         AGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG
genomic: GGTAACCCACATGGCACCAGAGCTGCTTCCAGGAAgtaagcaaca ... gcgtgtgcagAGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtactgctggatgtccttcacgcaatctgctgcccctttctgcgtgtgcagAGGCCCGAGTTGAGGCGAGCGCAGACGTGTACAGCTTTG
                                 ctgcccctttctgc  CT-rich tract