1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tacactgtttgtgcatccctgcagaagctgcacatacaccttggcacacaaacgcaatgctcttagcttactcgggcccaacgacttgtttatcacgcagGCTCTGGAGGTGATGCCGGAGGCCAATCGGCAGCAGATCCTGGCGCTGCCGCACCAGGCGCGTCAGGCGGTGTTCACTACCCTCATACAGCAGCAGCAGA
species | Chlamydomonas reinhardtii |
transcript | EDP09187 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
acacaaacgcaatgctcttagcttactcgggcccaacgacttgtttatcacgcagGCTCTGGAGGTGATGCCGGAGGCCAATCGGCAGCAGATCCTGGCGCTGCCGCACCAGGCGCGTCAGGCGGTGTTCACTACCCTCATACAGCAGCAGCAGA
agcttac putative branch site (score: 3)
cttgttt putative PPT
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacactgtttgtgcatccctgcagaagctgcacatacaccttggcacacaaacgcaatgctcttagcttactcgggcccaacgacttgtttatcacgcagGCTCTGGAGGTGATGCCGGAGGCCAATCGGCAGCAGATCCTGGCGCTGCCGCACCAGGCGCGTCAGGCGGTGTTCACTACCCTCATACAGCAGCAGCAGA
- - -tgtttgt
- - - - - - - - - - - - - - - -acataca
- - - - - - - - - - - - - - - - - - - - - -gcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - aacgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacgac