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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggcgggcgggcgggcgggtgacagcctggggccgtgttatcgcatcttatgtctctcatgcctgtgacctccatgctcggccgagtgcagtcagctgtgtgctcgagtcggcaacagcgtgtagccactccgcatgccgctgacctcgacgctacgtgtacccgccgtgtgtccgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGTGTGGGCTTGTGAGCGTGCCAACGCCCTTCTTGAGGCGGGGCGCACGTGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04078
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436290|gb|BM001510.1|BM001510
EST:     ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAG                         GACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
genomic: ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAGgtgcgggcgg ... cgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
EST: gi|15703791|gb|BI728096.1|BI728096
EST:     ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAG                         GACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
genomic: ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAGgtgcgggcgg ... cgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
EST: gi|22067396|gb|BQ817528.1|BQ817528
EST:     ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAG                         GACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGA
genomic: ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAGgtgcgggcgg ... cgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGA
EST: gi|8287566|gb|BE025125.1|BE025125
EST:     ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAG                         GACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
genomic: ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAGgtgcgggcgg ... cgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGT
EST: gi|22063723|gb|BQ815383.1|BQ815383
EST:     ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAG                         GACGAGACGGTGTCACAGGACATCATCACCCGCCGGGA
genomic: ACATCTGCGATGACGAGATGGAGCACGTCAAGACCATGAAGGCGTGCCAGgtgcgggcgg ... cgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgcatgccgctgacctcgacgctacgtgtacccgccgtgtgtccgccccacagGACGAGACGGTGTCACAGGACATCATCACCCGCCGGGAGGACGGCCCGCGTGTGGGCTTGTGAGCGTGCCAACGCCCTTCTTGAGGCGGGGCGCACGTGA
         cgctgac  putative branch site (score: 3)
                                           tccgcccc  putative PPT