1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ctggcctgcatccaagcgagctgcagttacactttagaacgcggatttaacgcggtaactttcaccgcggtggcgcctacccactgaccccgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATCAGCGTGTGGAACTTGCACCGCAGCCCTAAGCTGTGGGACGAGCCCGACA
species | Chlamydomonas reinhardtii |
transcript | EDO98047 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAG GACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATCEST: gi|161790640|gb|FC079408.1|FC079408
genomic: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAGgtgcgtgcac ... cgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATC
EST: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAG GACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGTGACCTGTTCATCEST: gi|15701649|gb|BI725954.1|BI725954
genomic: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAGgtgcgtgcac ... cgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATC
EST: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAG GACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATC
genomic: CGATGCGGCTCTACCCACAGCCGCCAGTACTCATTCGCCGCGCGCTGCAGgtgcgtgcac ... cgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATC
tttaacgcggtaactttcaccgcggtggcgcctacccactgaccccgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATCAGCGTGTGGAACTTGCACCGCAGCCCTAAGCTGTGGGACGAGCCCGACA
cactgac putative branch site (score: 2)
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggcctgcatccaagcgagctgcagttacactttagaacgcggatttaacgcggtaactttcaccgcggtggcgcctacccactgaccccgggccccagGACGACCACTTCGACCAGTTCACGGTGCCGGCCGGCAGCGACCTGTTCATCAGCGTGTGGAACTTGCACCGCAGCCCTAAGCTGTGGGACGAGCCCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - catccaa
- - - - - - - - - - - - agttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccact