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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcgccatagctgctgagcgaaatgttgcagtaccgtattgagctatcgtatgctttgcttgtgctggaacctgctcatgactttgttttgtcacgcctgttcggtcacgaagtcttttgcccttccctcaccttaccacagGTGGGCTGTGGTGATGTCGCGCAACGCCGGCTTCGCTGACCAGTGCGTGGAGCTCGACTTCCAGTATCCGTCGGAGGGCATCCACCGCCGATGGGACGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97462
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161795234|gb|FC081394.1|FC081394
EST:     AAGTGGAAGGAGGGCTTTTACGTGACTTCCATGGCCACGTCACACACGCG                         ATGGGCTGTGGTGATGTCGCGCAACGCCCGCTTCGCTGACCAGTGCGTGGA
genomic: AAGTGGAAGGAGGGCTTTTACGTCACTTCCATGGCCACGTCACACACGCGgtgagtgcgc ... cttaccacagGTGGGCTGTGGTGATGTCGCGCAACGCCGGCTTCGCTGACCAGTGCGTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcacgcctgttcggtcacgaagtcttttgcccttccctcaccttaccacagGTGGGCTGTGGTGATGTCGCGCAACGCCGGCTTCGCTGACCAGTGCGTGGAGCTCGACTTCCAGTATCCGTCGGAGGGCATCCACCGCCGATGGGACGCC
                                           accttac  putative branch site (score: 3)
                          tcttttgcccttccct  CT-rich tract