1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggtttatttggggtttggagtaaactaaccccccccccctgcaagccctgctagcgctgatcctaatgctactgctgccactgcgcatgatgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCACCATGGCGGCGCTGGAGCAGCGCGTCGCCGGCCAGTCCGCGTAAACAC
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAG GGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCEST: gi|161798448|gb|FC085724.1|FC085724
genomic: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAGgtgaggggtg ... tgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
EST: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAG GGCGTGTGGTCTCGCGCCCTGNGTCTGCCCATCGAGCGGCCCAAGTCGCTCEST: gi|23359351|gb|BU647171.1|BU647171
genomic: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAGgtgaggggtg ... tgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
EST: GCGTGCTGTCGCAG GGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCEST: gi|239841887|gb|GR283744.1|GR283744
genomic: GCGTGCTGTCGCAGgtgaggggtg ... tgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
EST: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAG GGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCEST: gi|15701461|gb|BI725766.1|BI725766
genomic: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAGgtgaggggtg ... tgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
EST: ACTACACGGTGCTGTTCGGAGTGTCGCGCGCGCTGGGCGTGCTGTCGCAG GGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
genomic: ACTACACGGTGCTGTTCGGGGTGTCGCGCGCGCTGGGCGTGCTGTCGCAGgtgaggggtg ... tgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTC
ccctgctagcgctgatcctaatgctactgctgccactgcgcatgatgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCACCATGGCGGCGCTGGAGCAGCGCGTCGCCGGCCAGTCCGCGTAAACAC
tcctaat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttatttggggtttggagtaaactaaccccccccccctgcaagccctgctagcgctgatcctaatgctactgctgccactgcgcatgatgctgtgcagGGCGTGTGGTCTCGCGCCCTGGGCCTGCCCATCGAGCGGCCCAAGTCGCTCACCATGGCGGCGCTGGAGCAGCGCGTCGCCGGCCAGTCCGCGTAAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- tttattt
- - - - - gggtttg
- - - - - - - - - - -aaactaa