1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgcggatgatggcacgacggcaggccgaggggagcgacaagtgcgctcaggcatggtgcagctgttgcgcacgttagcattatggactgttgtcaaaagctttcctttactgttgctgggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTGATGGACCTGCTGTGGAGCGACCCTACCACCAACGACAGCGTGCAGGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP09505 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTGEST: gi|23366408|gb|BU654228.1|BU654228
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
EST: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG ATCTCCGAGCTGAAGCGCCCCATCACCAEST: gi|161822256|gb|FC110356.1|FC110356
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCA
EST: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTGEST: gi|15697986|gb|BI722291.1|BI722291
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
EST: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
gttagcattatggactgttgtcaaaagctttcctttactgttgctgggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTGATGGACCTGCTGTGGAGCGACCCTACCACCAACGACAGCGTGCAGGGCG
attat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggatgatggcacgacggcaggccgaggggagcgacaagtgcgctcaggcatggtgcagctgttgcgcacgttagcattatggactgttgtcaaaagctttcctttactgttgctgggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTGATGGACCTGCTGTGGAGCGACCCTACCACCAACGACAGCGTGCAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG