1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgtgctggactgcctcacccaagctgctcacaccggtccctcctgccccacctcctccctgccgctcacaaacacacgcgcacacacacacacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACATCGCG
species | Chlamydomonas reinhardtii |
transcript | EDP07913 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAG GAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACEST: gi|34985521|gb|CF559438.1|CF559438
genomic: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAGgtgagtgggt ... acacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
EST: GGTTCGTGGCCAGCAGCATCATCGGCGCCTCCAGCATGGAGCAGCTCAAG GAGAACCTGAAGGCGTTTGACAAGGACATCTCGGATGAGTGCGCCGCTGACEST: gi|9458504|gb|BE452272.1|BE452272
genomic: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAGgtgagtgggt ... acacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
EST: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAG GAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACEST: gi|34984019|gb|CF557936.1|CF557936
genomic: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAGgtgagtgggt ... acacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
EST: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAG GAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACEST: gi|34984018|gb|CF557935.1|CF557935
genomic: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAGgtgagtgggt ... acacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
EST: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAG GAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
genomic: GGTTCGTGGCCAGCAGCATCATCGGCGCCACCAGCATGGAGCAGCTCAAGgtgagtgggt ... acacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGAC
gccccacctcctccctgccgctcacaaacacacgcgcacacacacacacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACATCGCG
cgctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgctggactgcctcacccaagctgctcacaccggtccctcctgccccacctcctccctgccgctcacaaacacacgcgcacacacacacacacacagGAGAACCTGAAGGCGTTCGACAAGGACATCTCGGATGAGTGCGCCGCTGACATCGCG
gtgtgct
- - - - - - - -tcaccca
- - - - - - - - - - - - - -ctcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca