1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaccgtgtgtgccccacacactgcttgctccagtctcaggccagccccgcctgtgtgtgacatgcatgcctcggccgtgtgcttaatgccccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGATTAGCATGTAGGAGGTTTCAATATATGTTGTAGCTTGCTTTCAAGTGG
species | Chlamydomonas reinhardtii |
transcript | EDP07884 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAG GTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGEST: gi|10773359|gb|AV624182.1|AV624182
genomic: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAGgtgcgtgcca ... cccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAG
EST: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAG GTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGEST: gi|10773468|gb|AV624291.1|AV624291
genomic: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAGgtgcgtgcca ... cccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAG
EST: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAG GTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGEST: gi|10770519|gb|AV621344.1|AV621344
genomic: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAGgtgcgtgcca ... cccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAG
EST: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAG GTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAG
genomic: TGGGCGGCGACGTGACCACCGCCCTCTCCCTTCAGGAGCTGGACCTGCAGgtgcgtgcca ... cccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAG
ccccgcctgtgtgtgacatgcatgcctcggccgtgtgcttaatgccccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGATTAGCATGTAGGAGGTTTCAATATATGTTGTAGCTTGCTTTCAAGTGG
gcttaat putative branch site (score: 4)
ccccgcc CT-rich tract
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaccgtgtgtgccccacacactgcttgctccagtctcaggccagccccgcctgtgtgtgacatgcatgcctcggccgtgtgcttaatgccccgccgcagGTGACGACCGAGCCCTGCCCGACCGGCTACATGTTCGCCGTGTACTGCCAGATTAGCATGTAGGAGGTTTCAATATATGTTGTAGCTTGCTTTCAAGTGG
- - -gtgtgtg
- - - tgtgtgc
- - - - - - - ccacaca
- - - - - - - - - - -ctgcttg
- - - - - - - - - - - - - - - - agtctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgc