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gtgcgcggcggcgtctgagggaggggagcagtggggtaggggagttcggaggggtggaaggagggagtgaactcgtttgcggtgcgcgccatgcctcttgtcctgtccccctctcccctctctccctcaatccctcctcactgctcgccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTGTGGGTGACGGCCGCACGCAGCAGCAGGTGGAGGGCCGCGTCAAGCAGA
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|16072824|gb|BI874820.1|BI874820
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|16435777|gb|BM000997.1|BM000997
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|22068172|gb|BQ818111.1|BQ818111
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|10770164|gb|AV620989.1|AV620989
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAACGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|49465911|gb|BP093824.1|BP093824
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTEST: gi|22052894|gb|BQ810459.1|BQ810459
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
EST: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAG GTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
genomic: CCGTGGTTAAGGACGAGCTGGGCATCACCCTGGAGAAGGCCACCGAGGAGgtgcgcggcg ... ccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATT
ctgtccccctctcccctctctccctcaatccctcctcactgctcgccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTGTGGGTGACGGCCGCACGCAGCAGCAGGTGGAGGGCCGCGTCAAGCAGA
tcctcac putative branch site (score: 2)
cctctcccctctctcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcggcggcgtctgagggaggggagcagtggggtaggggagttcggaggggtggaaggagggagtgaactcgtttgcggtgcgcgccatgcctcttgtcctgtccccctctcccctctctccctcaatccctcctcactgctcgccgcgcgcagGTGCTGGGCCTGGCTGCCAAGGTGTCGATCTCCAAGGAGGCCACCACCATTGTGGGTGACGGCCGCACGCAGCAGCAGGTGGAGGGCCGCGTCAAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG