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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggggcgggatcaggcggtcggcggggtggggcaggtggtgcgactgtgtgaccgacattggcctgcaggctcccggctgatgtctgtgtgcgagctttcgcaagtctcggtatccgaccaagcgcccgcccacgcgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCCGCTGTCTGGGCGCCGCGAGAAGATGGTGATCGCCAAGGAGAACAACTTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22054028|gb|BQ811113.1|BQ811113
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTTCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22054029|gb|BQ811114.1|BQ811114
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTTCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22076143|gb|BQ824919.1|BQ824919
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|15369143|gb|BI528569.1|BI528569
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22076228|gb|BQ825004.1|BQ825004
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|6546842|gb|AV392626.1|AV392626
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGG
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGG
EST: gi|161817937|gb|FC103632.1|FC103632
EST:     TTTATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|15691957|gb|BI716262.1|BI716262
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|10127159|gb|BE725863.1|BE725863
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22072693|gb|BQ822031.1|BQ822031
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTTCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|14230365|gb|BG849181.1|BG849181
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22075187|gb|BQ823947.1|BQ823947
EST:     TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTTCCGTGTCGAGTGCGCC
genomic: TTCATGAACTTCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
EST: gi|22055484|gb|BQ811846.1|BQ811846
EST:     TCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAG                         GTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC
genomic: TCATGCACCGCGACGAGGAAATCAACTACTTCCCCAGCAGgtggggcggg ... cgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggggcgggatcaggcggtcggcggggtggggcaggtggtgcgactgtgtgaccgacattggcctgcaggctcccggctgatgtctgtgtgcgagctttcgcaagtctcggtatccgaccaagcgcccgcccacgcgatgcacagGTTTGACCCGGTGCGCAACGCGGAGCGGGTGGCTGCCGTGTCGAGTGCGCCGCTGTCTGGGCGCCGCGAGAAGATGGTGATCGCCAAGGAGAACAACTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA