1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttgccctgctggcggtggctgctgccccatgtctcgcattgcctatctcgacctcatccccgccccccctgccccctcgcttggtaacctacacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTGTTCTCGCCCGAGACTGAGCAGGTCTACAAGTACCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO99486 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAG AAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTGEST: gi|22073579|gb|BQ822917.1|BQ822917
genomic: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAGgtacggccta ... acacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTG
EST: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAG AAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTGEST: gi|16437961|gb|BM003181.1|BM003181
genomic: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAGgtacggccta ... acacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTG
EST: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAG AAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTG
genomic: ACTCGCTGAAACGCGCCGCCACCCACGGCCTGCGTCAGGATATCCACGAGgtacggccta ... acacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTG
tctcgacctcatccccgccccccctgccccctcgcttggtaacctacacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTGTTCTCGCCCGAGACTGAGCAGGTCTACAAGTACCTGCAG
tggtaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccctgctggcggtggctgctgccccatgtctcgcattgcctatctcgacctcatccccgccccccctgccccctcgcttggtaacctacacgcacagAAAGTGGAGTCCGACCGCGACTTCCACGACCTGCACGCTGCTGCTGAGGTGTTCTCGCCCGAGACTGAGCAGGTCTACAAGTACCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG