1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acggccttgcctgtcctgccgccttatcacacccgcttcccgcgccaccgcctgctccctcctgaaccctgcccctggtctccgctgcttgcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAGTACTACGGCATCACGGAGGAGAACTACTACACGGTGCTGTTCGGGGTGT
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAG ATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAGEST: gi|161798448|gb|FC085724.1|FC085724
genomic: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAGgtgggcaggg ... gcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAG
EST: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAG ATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAGEST: gi|239841887|gb|GR283744.1|GR283744
genomic: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAGgtgggcaggg ... gcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAG
EST: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAG ATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAGEST: gi|15701461|gb|BI725766.1|BI725766
genomic: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAGgtgggcaggg ... gcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAG
EST: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAG ATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAG
genomic: TGGCGGACCTGTACGAGGTGGTGCCCGAGGTGCTGGGCAAGACCGGCAAGgtgggcaggg ... gcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggccttgcctgtcctgccgccttatcacacccgcttcccgcgccaccgcctgctccctcctgaaccctgcccctggtctccgctgcttgcggctgcagATCAAGAACCCCTGGCCCAACGTGGACGCGCACAGCGGCGTGCTGCTGCAGTACTACGGCATCACGGAGGAGAACTACTACACGGTGCTGTTCGGGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -tgcctgt
- - - - - - - - - - - - - -cacaccc