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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcacgcgccgcagcagctgggaacgcgggttcagcggcaaccgggtctgcttcactcacatatacacgaacctctgatccgtctgcttgctcacctctgtgcactcaccccggtggctcctttgccaacatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGTCTGGGCGACGAGCCGGGCGTGTTCGTGTGGCGCCGCATCAACGAGCTGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09505
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23363266|gb|BU651086.1|BU651086
EST:     TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAG                         GCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
genomic: TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAGgtgcgcacgc ... acatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
EST: gi|23366408|gb|BU654228.1|BU654228
EST:     TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAG                         GCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
genomic: TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAGgtgcgcacgc ... acatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
EST: gi|161822256|gb|FC110356.1|FC110356
EST:     TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAG                         GCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
genomic: TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAGgtgcgcacgc ... acatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
EST: gi|15697986|gb|BI722291.1|BI722291
EST:     TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAG                         GCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT
genomic: TCAAGATCGAGCACCCGCGCTCCGTGCATCTCATACGCGGCAACCACGAGgtgcgcacgc ... acatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcttgctcacctctgtgcactcaccccggtggctcctttgccaacatacgcagGCGCACGACATCAACGCGCTGTTCGGCTTCCGACTGGAGTGCCTGGAGCGTCTGGGCGACGAGCCGGGCGTGTTCGTGTGGCGCCGCATCAACGAGCTGT
                   cactcac  putative branch site (score: 2)